Mahdessian, D. et al. Spatiotemporal dissection of the cell cycle with single-cell proteogenomics. 19459003 Nature 19459004 590, 649– 654 (2021 ). Post CAS PubMed Google Scholar 19659003 Scialdone, A. et al. Computational task of cell-cycle phase from single-cell transcriptome information. 19459003 Approaches 85, 54– 61 (2015 ). 19659004 Short article CAS PubMed Google Scholar Skinner, S. O. et al. Single-cell analysis of transcription kinetics throughout the cell cycle. 19459003 eLife 5, e12175 (2016 ). Post PubMed Central Google Scholar Cao, J., Zhou, W., Steemers, F., Trapnell, C. & & Shendure, J. Sci-fate defines the characteristics of gene expression in single cells. 19459003 Nat. Biotechnol. 19459004 38, 980– 988 (2020 ). Post CAS PubMed Central Google Scholar 19659009 Qu, R. et al. Decaying a deterministic course to mesenchymal specific niche development by 2 converging morphogen gradients. 19459003 Dev. Cell 19459004 57, 1053– 1067 (2022 ). 19659010 Short article CAS PubMed Central Google Scholar Macaulay, I. C. et al. Single-cell RNA-sequencing exposes a constant spectrum of distinction in hematopoietic cells. 19459003 Cell Rep. 19459004 14, 966– 977 (2016 ). 19659012 Post CAS PubMed Central Google Scholar 19659013 Chu, L.-F. et al. Single-cell RNA-seq exposes unique regulators of human embryonic stem cell distinction to conclusive endoderm. 19459003 Genome Biol. 19459004 17, 173 (2016 ). 19659014 Post PubMed Central Google Scholar Chen, R., Wu, X., Jiang, L. & & Zhang, Y. Single-cell RNA-seq exposes hypothalamic cell variety. 19459003 Cell Rep. 19459004 18, 3227– 3241 (2017 ). Post CAS PubMed Central Google Scholar Street, K. et al. Slingshot: cell family tree and pseudotime reasoning for single-cell transcriptomics. BMC Genomics 19, 477 (2018 ). Short article PubMed Central Google Scholar Cao, J. et al. The single-cell transcriptional landscape of mammalian organogenesis. Nature 19459004 566, 496– 502 (2019 ). 19659020 Short article CAS PubMed Central Google Scholar Wolf, F. A. et al. PAGA: chart abstraction fixes up clustering with trajectory reasoning through a geography maintaining map of single cells. 19459003 Genome Biol. 19459004 20, 59 (2019 ). 19659022 Post PubMed Central Google Scholar 19659023 Van den Berge, K. et al. Trajectory-based differential expression analysis for single-cell sequencing information. Nat. Commun. 19459004 11, 1201 (2020 ). 19659024 Short article PubMed Central Google Scholar 19659025 Deconinck, L., Cannoodt, R., Saelens, W., Deplancke, B. & & Saeys, Y. Recent advances in trajectory reasoning from single-cell omics information. Curr. Opin. Syst. Biol. 27, 100344 (2021 ). 19659026 Short article CAS Google Scholar Saelens, W., Cannoodt, R., Todorov, H. & & Saeys, Y. A contrast of single-cell trajectory reasoning techniques. 19459003 Nat. Biotechnol. 37, 547– 554 (2019 ). 19659028 Short article CAS PubMed Google Scholar Lange, M. et al. CellRank for directed single-cell fate mapping. Nat. Approaches 19, 19659030ยป … 19659031 Learn more 19459037